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    Author information
    First name: Hidde de
    Last name: Jong
    DBLP: 21/3073
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    Conference paper
    Nils Giordano, Francis Mairet, Jean-Luc Gouzé, Johannes Geiselmann, Hidde de Jong.
    Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies.
    PLoS Computational Biology 2016, Volume 12 (0) 2016
    Journal article
    Diana Stefan, Corinne Pinel, Stéphane Pinhal, Eugenio Cinquemani, Johannes Geiselmann, Hidde de Jong.
    Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data.
    PLoS Computational Biology 2015, Volume 11 (0) 2015
    Conference paper
    Valentin Zulkower, Michel Page, Delphine Ropers, Johannes Geiselmann, Hidde de Jong.
    Robust reconstruction of gene expression profiles from reporter gene data using linear inversion.
    Bioinformatics 2015, Volume 31 (0) 2015
    Conference paper
    Hidde de Jong, Johannes Geiselmann.
    Fluorescent Reporter Genes and the Analysis of Bacterial Regulatory Networks.
    Hybrid Systems Biology - Second International Workshop, HSB 2013, Taormina, Italy, September 2, 2013 and Third International Workshop, HSB 2014, Vienna, Austria, July 23-24, 2014, Revised Selected Papers 2015 (0) 2014
    Journal article
    Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar.
    SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
    BMC Systems Biology 2013, Volume 7 (0) 2013
    Journal article
    Delphine Ropers, Valentina Baldazzi, Hidde de Jong.
    Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli.
    IEEE/ACM Trans. Comput. Biology Bioinform. 2011, Volume 8 (0) 2011
    Conference paper
    Radu Mateescu, Pedro T. Monteiro, Estelle Dumas, Hidde de Jong.
    CTRL: Extension of CTL with regular expressions and fairness operators to verify genetic regulatory networks.
    Theor. Comput. Sci. 2011, Volume 412 (0) 2011
    Conference paper
    Sara Berthoumieux, Matteo Brilli, Hidde de Jong, Daniel Kahn, Eugenio Cinquemani.
    Identification of metabolic network models from incomplete high-throughput datasets.
    Bioinformatics 2011, Volume 27 (0) 2011
    Journal article
    Rafael Silva-Rocha, Hidde de Jong, Javier Tamames, Víctor de Lorenzo.
    The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene.
    BMC Systems Biology 2011, Volume 5 (0) 2011
    Conference paper
    Frédéric Boyer, Bruno Besson, Guillaume Baptist, Jérôme Izard, Corinne Pinel, Delphine Ropers, Johannes Geiselmann, Hidde de Jong.
    WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data.
    Bioinformatics 2010, Volume 26 (0) 2010
    Conference paper
    Grégory Batt, Michel Page, Irene Cantone, Gregor Gößler, Pedro T. Monteiro, Hidde de Jong.
    Efficient parameter search for qualitative models of regulatory networks using symbolic model checking.
    Bioinformatics 2010, Volume 26 (0) 2010
    Journal article
    Valentina Baldazzi, Delphine Ropers, Yves Markowicz, Daniel Kahn, Johannes Geiselmann, Hidde de Jong.
    The Carbon Assimilation Network in
    PLoS Computational Biology 2010, Volume 6 (0) 2010
    Journal article
    Hidde de Jong, Caroline Ranquet, Delphine Ropers, Corinne Pinel, Johannes Geiselmann.
    Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria.
    BMC Systems Biology 2010, Volume 4 (0) 2010
    Conference paper
    Pedro T. Monteiro, Estelle Dumas, Bruno Besson, Radu Mateescu, Michel Page, Ana T. Freitas, Hidde de Jong.
    A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.
    BMC Bioinformatics 2009, Volume 10 (0) 2009
    Journal article
    Samuel Drulhe, Giancarlo Ferrari-Trecate, Hidde de Jong.
    The Switching Threshold Reconstruction Problem for Piecewise-Affine Models of Genetic Regulatory Networks.
    IEEE Trans. Automat. Contr. 2008, Volume 53 (0) 2008
    Conference paper
    Radu Mateescu, Pedro T. Monteiro, Estelle Dumas, Hidde de Jong.
    Computation Tree Regular Logic for Genetic Regulatory Networks.
    Automated Technology for Verification and Analysis, 6th International Symposium, ATVA 2008, Seoul, Korea, October 20-23, 2008. Proceedings 2008 (0) 2008
    Conference paper
    Hidde de Jong.
    Qualitative Modeling and Simulation of Bacterial Regulatory Networks.
    Computational Methods in Systems Biology, 6th International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008. Proceedings 2008 (0) 2008
    Conference paper
    Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong.
    Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks.
    ECAI 2008 - 18th European Conference on Artificial Intelligence, Patras, Greece, July 21-25, 2008, Proceedings 2008 (0) 2008
    Conference paper
    Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong.
    Temporal logic patterns for querying dynamic models of cellular interaction networks.
    ECCB'08 Proceedings, Seventh European Conference on Computational Biology, 22-26 September 2008, Cagliari, Italy 2008 (0) 2008
    Conference paper
    Riccardo Porreca, Samuel Drulhe, Hidde de Jong, Giancarlo Ferrari-Trecate.
    Structural Identification of Piecewise-Linear Models of Genetic Regulatory Networks.
    Journal of Computational Biology 2008, Volume 15 (0) 2008
    Conference paper
    Hidde de Jong, Michel Page.
    Search for Steady States of Piecewise-Linear Differential Equation Models of Genetic Regulatory Networks.
    IEEE/ACM Trans. Comput. Biology Bioinform. 2008, Volume 5 (0) 2008
    Conference paper
    Grégory Batt, Hidde de Jong, Michel Page, Johannes Geiselmann.
    Symbolic reachability analysis of genetic regulatory networks using discrete abstractions.
    Automatica 2008, Volume 44 (0) 2008
    Conference paper
    M. W. J. M. Musters, Hidde de Jong, P. P. J. van den Bosch, Natal A. W. van Riel.
    Qualitative Analysis of Nonlinear Biochemical Networks with Piecewise-Affine Functions.
    Hybrid Systems: Computation and Control, 10th International Workshop, HSCC 2007, Pisa, Italy, April 3-5, 2007, Proceedings 2007 (0) 2007
    Conference paper
    Grégory Batt, Hidde de Jong, Johannes Geiselmann, Jean-Luc Gouzé, Michel Page, Delphine Ropers, Sari Tewfik, Dominique Schneider.
    Analyse qualitative de la dynamique de réseaux de régulation génique par des modèles linéaires par morceaux.
    Technique et Science Informatiques 2007, Volume 26 (0) 2007
    Conference paper
    Samuel Drulhe, Giancarlo Ferrari-Trecate, Hidde de Jong, A. Viari.
    Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks.
    Hybrid Systems: Computation and Control, 9th International Workshop, HSCC 2006, Santa Barbara, CA, USA, March 29-31, 2006, Proceedings 2006 (0) 2006
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